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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
ATAC-seq
42
ChIP-seq
20
total RNA-seq
11
snATAC-seq
4
Hi-C
4
MeRIP-seq
2
RRBS
1
pCHi-C
Assay category
66
DNA accessibility
42
DNA binding
20
Transcription
4
3D chromatin structure
2
DNA methylation
Target of assay
35
control
9
histone
9
histone modification
5
broad histone mark
4
narrow histone mark
2
nucleotide modification
Date released
24
May, 2022
20
November, 2019
18
February, 2023
17
August, 2017
11
October, 2018
10
October, 2019
8
January, 2021
6
September, 2017
5
March, 2019
4
July, 2018
4
March, 2020
4
November, 2020
2
August, 2021
2
July, 2019
1
August, 2022
1
February, 2020
1
May, 2019
1
May, 2021
Available data
474
bam
bigWig
283
tsv
243
fastq
141
bed narrowPeak
69
bigBed narrowPeak
29
bed bed3+
21
bed broadPeak
16
tagAlign
7
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
bedpe bed3+
3
hic
1
bedpe
1
hdf5
Organism
138
Homo sapiens
Biosample type
132
tissue
7
cell line
Organ
323
pancreas
epithelium
223
kidney
169
heart
169
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
111
AMP
28
T1D
Genome assembly (visualization)
46
hg19
23
GRCh38
Lab
77
AMP-T2D consortium
51
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
1
audit script error
files.file_type!
bigWig
organ_slims!
epithelium
BIOSAMPLE
ASSAY
139 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
snATAC-seq
Hi-C
MeRIP-seq
RRBS
pCHi-C
tissue
islet of Langerhans
55
21
18
7
3
4
1
pancreas
3
1
4
1
1
1
body of pancreas
9
1
endocrine pancreas
2
cell line
Panc1
7
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