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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
111
ATAC-seq
73
total RNA-seq
57
ChIP-seq
47
WGBS
21
snATAC-seq
10
MeRIP-seq
9
single cell RNA-seq
8
Hi-C
2
Capture-C
2
RRBS
2
pCHi-C
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
132
DNA accessibility
82
Transcription
57
DNA binding
49
DNA methylation
8
3D chromatin structure
Target of assay
53
control
9
histone
9
histone modification
5
broad histone mark
5
nucleotide modification
4
narrow histone mark
Date released
104
May, 2022
56
February, 2023
29
August, 2017
24
November, 2019
19
April, 2020
18
May, 2021
16
September, 2020
11
October, 2018
10
November, 2020
10
October, 2019
8
January, 2021
6
February, 2021
6
September, 2017
5
March, 2019
5
March, 2020
4
August, 2021
4
July, 2018
3
October, 2022
2
July, 2019
1
August, 2022
1
February, 2020
1
May, 2019
Available data
689
bam
bigWig
471
fastq
418
tsv
214
bed narrowPeak
91
bigBed narrowPeak
80
zippedFastqFolder
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
3
cool
1
bedpe
1
hdf5
Organism
340
Homo sapiens
Biosample type
154
primary cell
152
tissue
36
cell line
1
in vitro differentiated cells
Organ
323
pancreas
223
epithelium
223
kidney
169
heart
169
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
154
AMP
142
HPAP
28
T1D
19
LungMap
Genome assembly (visualization)
51
hg19
24
GRCh38
Lab
142
Klaus Kaestner, Upenn
114
AMP-T2D consortium
51
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
28
inconsistent ontology term
4
audit script error
files.file_type!
bigWig
BIOSAMPLE
ASSAY
343 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
WGBS
snATAC-seq
MeRIP-seq
single cell RNA-seq
Hi-C
Capture-C
RRBS
pCHi-C
CRISPR genome editing followed by sgRNA sequencing
primary cell
pancreatic alpha cell
22
42
6
31
1
pancreatic beta cell
13
11
6
16
1
pancreatic acinar cell
4
1
tissue
islet of Langerhans
55
18
21
7
4
3
1
lung
10
9
1
pancreas
1
3
4
1
1
1
body of pancreas
1
9
endocrine pancreas
2
cell line
EndoC_BH1
17
2
6
1
2
1
Panc1
7
in vitro differentiated cells
pancreatic PP cell
1
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