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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
ATAC-seq
23
ChIP-seq
7
total RNA-seq
6
single cell RNA-seq
3
Hi-C
1
RRBS
1
WGBS
1
pCHi-C
Assay category
55
DNA accessibility
23
DNA binding
13
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
20
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
43
February, 2023
18
February, 2021
11
May, 2019
11
October, 2019
6
August, 2021
3
February, 2020
3
March, 2020
2
July, 2019
Available data
193
bam
bigWig
141
bed narrowPeak
83
bigBed narrowPeak
68
tsv
17
bed broadPeak
17
bigBed broadPeak
13
bed bed3+
6
fastq
6
tagAlign
4
bed bed3
4
txt
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
97
Homo sapiens
Biosample type
79
tissue
10
cell line
8
primary cell
Organ
323
pancreas
223
epithelium
223
kidney
169
heart
169
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
97
AMP
Genome assembly (visualization)
51
GRCh38
24
hg19
Lab
97
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bigWig
BIOSAMPLE
ASSAY
97 results
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ATAC-seq
ChIP-seq
total RNA-seq
single cell RNA-seq
Hi-C
RRBS
WGBS
pCHi-C
tissue
coronary artery
35
2
1
aorta
2
4
1
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
+ See 13 more…
cell line
smooth muscle cell of the coronary artery
8
2
primary cell
endothelial cell of umbilical vein
5
2
choroid plexus epithelial cell
1
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