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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
112
ChIP-seq
30
total RNA-seq
4
WGBS
4
pCHi-C
3
Hi-C
2
ATAC-seq
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
112
DNA binding
31
Transcription
6
DNA methylation
3
3D chromatin structure
3
DNA accessibility
1
DNA sequencing
Target of assay
95
control
20
histone
20
histone modification
12
broad histone mark
narrow histone mark
5
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
47
November, 2017
28
August, 2017
24
May, 2020
20
May, 2022
18
August, 2021
13
December, 2017
3
February, 2021
3
March, 2020
2
July, 2019
1
December, 2018
1
February, 2020
1
November, 2018
1
October, 2019
Available data
631
bam
bigWig
446
fastq
390
bed narrowPeak
344
bigBed narrowPeak
175
tsv
57
bed broadPeak
57
bigBed broadPeak
46
tagAlign
11
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
162
Homo sapiens
Biosample type
89
tissue
69
cell line
3
primary cell
1
in vitro differentiated cells
Organ
319
pancreas
223
kidney
222
epithelium
169
heart
161
liver
101
bone element
99
connective tissue
80
vasculature
79
blood vessel
56
adipose tissue
56
artery
53
brain
53
eye
30
limb
26
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
7
embryo
6
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
162
AMP
Genome assembly (visualization)
8
hg19
3
GRCh38
Lab
125
AMP-T2D consortium
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
files.file_type!
bigWig
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
162 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
pCHi-C
Hi-C
ATAC-seq
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
55
20
3
1
1
1
1
right lobe of liver
3
1
1
1
gastric (mucosa of stomach)
1
cell line
HepG2
52
9
2
2
1
2
1
primary cell
hepatocyte
1
1
Liver fetal (hepatocyte)
1
in vitro differentiated cells
hepatocyte
1
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