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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
6
Hi-C
5
RRBS
3
pCHi-C
2
total RNA-seq
1
single cell RNA-seq
1
snATAC-seq
Assay category
20
DNA binding
6
3D chromatin structure
5
DNA methylation
3
Transcription
1
DNA accessibility
Target of assay
14
control
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
Date released
13
August, 2017
5
July, 2019
5
March, 2020
4
December, 2018
3
November, 2018
2
February, 2020
2
June, 2019
2
May, 2022
1
January, 2019
1
May, 2019
Available data
bigWig
81
bam
74
bed narrowPeak
60
bigBed narrowPeak
47
bed broadPeak
35
bed bed3+
34
bigBed broadPeak
26
fastq
15
tagAlign
11
tsv
6
bed bedMethyl
6
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
txt
Organism
38
Homo sapiens
Biosample type
35
tissue
3
primary cell
Organ
323
pancreas
223
epithelium
223
kidney
169
heart
169
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
38
AMP
Genome assembly (visualization)
6
hg19
Lab
38
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
files.file_type!
bigWig
BIOSAMPLE
ASSAY
38 results
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ChIP-seq
Hi-C
RRBS
pCHi-C
total RNA-seq
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
9
4
1
1
spleen
8
1
gastrocnemius medialis
4
1
psoas muscle
2
1
gastric (mucosa of stomach)
1
+ See 2 more…
primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
See all biosamples
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