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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ATAC-seq
23
ChIP-seq
6
single cell RNA-seq
3
Hi-C
3
total RNA-seq
1
pCHi-C
Assay category
43
DNA accessibility
23
DNA binding
9
Transcription
3
3D chromatin structure
Target of assay
20
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
35
February, 2023
11
May, 2019
11
October, 2019
10
February, 2021
6
August, 2021
3
February, 2020
3
March, 2020
July, 2019
Available data
176
bam
bigWig
131
bed narrowPeak
83
bigBed narrowPeak
63
tsv
17
bed broadPeak
17
bigBed broadPeak
11
bed bed3+
6
fastq
6
tagAlign
3
hic
2
bedpe bed3+
1
tar
Organism
79
Homo sapiens
Biosample type
62
tissue
10
cell line
7
primary cell
Organ
321
pancreas
219
kidney
217
epithelium
167
liver
165
heart
113
connective tissue
101
bone element
79
blood vessel
79
vasculature
66
adipose tissue
62
brain
56
artery
54
eye
27
limb
23
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
79
AMP
Genome assembly (visualization)
43
GRCh38
11
hg19
Lab
79
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bigWig
month_released!
July, 2019
BIOSAMPLE
ASSAY
79 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
Hi-C
total RNA-seq
pCHi-C
tissue
coronary artery
35
2
1
aorta
2
4
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
+ See 1 more…
cell line
smooth muscle cell of the coronary artery
8
2
primary cell
endothelial cell of umbilical vein
5
2
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