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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
4
single cell RNA-seq
3
Hi-C
1
RRBS
1
WGBS
1
pCHi-C
1
total RNA-seq
Assay category
14
DNA binding
5
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
11
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
9
May, 2019
6
October, 2019
4
August, 2021
3
March, 2020
2
July, 2019
1
February, 2020
Available data
83
bam
bigWig
59
bed narrowPeak
58
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
10
tsv
9
bed bed3+
6
fastq
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
25
Homo sapiens
Biosample type
17
tissue
8
primary cell
Organ
323
pancreas
223
epithelium
223
kidney
169
heart
169
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
25
AMP
Genome assembly (visualization)
4
hg19
Lab
25
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bigWig
organ_slims!
artery
BIOSAMPLE
ASSAY
25 results
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ChIP-seq
single cell RNA-seq
Hi-C
RRBS
WGBS
pCHi-C
total RNA-seq
tissue
aorta
2
4
1
1
1
ascending aorta
3
1
thoracic aorta
4
primary cell
endothelial cell of umbilical vein
5
2
choroid plexus epithelial cell
1
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