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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ATAC-seq
18
ChIP-seq
6
single cell RNA-seq
3
total RNA-seq
1
Hi-C
1
WGBS
1
pCHi-C
Assay category
43
DNA accessibility
18
DNA binding
9
Transcription
1
3D chromatin structure
1
DNA methylation
Target of assay
18
control
Date released
35
February, 2023
11
May, 2019
10
February, 2021
6
August, 2021
5
October, 2019
3
February, 2020
2
March, 2020
1
July, 2019
Available data
155
bam
bigWig
113
bed narrowPeak
67
tsv
63
bigBed narrowPeak
6
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
6
tagAlign
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
73
Homo sapiens
Biosample type
63
tissue
10
cell line
Organ
323
pancreas
epithelium
223
kidney
169
heart
169
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
73
AMP
Genome assembly (visualization)
43
GRCh38
9
hg19
Lab
73
AMP-T2D consortium
files.file_type!
bigWig
organ_slims!
epithelium
BIOSAMPLE
ASSAY
73 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
Hi-C
WGBS
pCHi-C
tissue
coronary artery
35
2
1
aorta
2
4
1
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
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cell line
smooth muscle cell of the coronary artery
8
2
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