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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ATAC-seq
20
ChIP-seq
6
single cell RNA-seq
3
Hi-C
3
total RNA-seq
1
RRBS
1
WGBS
1
pCHi-C
Assay category
43
DNA accessibility
20
DNA binding
9
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
20
control
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
35
February, 2023
11
May, 2019
10
February, 2021
8
October, 2019
6
August, 2021
3
February, 2020
3
March, 2020
2
July, 2019
Available data
114
bam
bigWig
68
tsv
67
bed narrowPeak
17
bigBed narrowPeak
13
bed bed3+
13
bed broadPeak
13
bigBed broadPeak
6
tagAlign
4
fastq
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
78
Homo sapiens
Biosample type
63
tissue
10
cell line
5
primary cell
Organ
314
pancreas
223
kidney
220
epithelium
169
heart
149
liver
101
bone element
78
vasculature
77
blood vessel
71
connective tissue
56
artery
53
eye
43
brain
36
adipose tissue
30
limb
22
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
7
embryo
4
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
78
AMP
Genome assembly (visualization)
43
GRCh38
12
hg19
Lab
78
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bigWig
target.investigated_as!
histone
BIOSAMPLE
ASSAY
78 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
Hi-C
total RNA-seq
RRBS
WGBS
pCHi-C
tissue
coronary artery
35
2
1
aorta
2
4
1
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
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cell line
smooth muscle cell of the coronary artery
8
2
primary cell
endothelial cell of umbilical vein
2
2
choroid plexus epithelial cell
1
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