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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
ChIP-seq
30
ATAC-seq
9
total RNA-seq
5
pCHi-C
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
78
DNA binding
30
DNA accessibility
11
Transcription
4
3D chromatin structure
Target of assay
37
control
34
histone
34
histone modification
19
broad histone mark
15
narrow histone mark
12
transcription factor
RNA binding protein
Date released
38
May, 2021
20
August, 2017
20
August, 2021
13
February, 2023
9
December, 2017
8
February, 2018
6
March, 2020
5
November, 2019
4
February, 2021
4
October, 2019
2
December, 2019
1
August, 2018
Available data
285
bam
bigWig
135
fastq
131
tsv
126
bed narrowPeak
40
tagAlign
25
bed bed3+
15
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
130
Homo sapiens
Biosample type
1004
tissue
475
primary cell
138
cell line
130
in vitro differentiated cells
7
stem cell
Organ
40
connective tissue
8
embryo
4
epithelium
1
adipose tissue
1
liver
1
pancreas
Project
130
AMP
Genome assembly (visualization)
43
hg19
22
GRCh38
Lab
91
AMP-T2D consortium
37
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
22
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
files.file_type!
bigWig
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
130 results
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ChIP-seq
ATAC-seq
total RNA-seq
pCHi-C
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
embryonic stem cell
33
5
1
adipocyte
20
5
1
1
neural progenitor cell
8
10
cardiomyocytes (cardiac muscle cell)
1
2
2
2
pancreatic endoderm
6
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