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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ATAC-seq
21
ChIP-seq
6
single cell RNA-seq
3
Hi-C
3
total RNA-seq
1
RRBS
1
WGBS
1
pCHi-C
Assay category
43
DNA accessibility
21
DNA binding
9
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
20
control
3
histone
3
histone modification
broad histone mark
1
narrow histone mark
Date released
35
February, 2023
11
May, 2019
10
February, 2021
9
October, 2019
6
August, 2021
3
February, 2020
3
March, 2020
2
July, 2019
Available data
140
bam
bigWig
92
bed narrowPeak
68
tsv
42
bigBed narrowPeak
15
bed broadPeak
15
bigBed broadPeak
13
bed bed3+
6
fastq
6
tagAlign
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
79
Homo sapiens
Biosample type
63
tissue
10
cell line
6
primary cell
Organ
318
pancreas
223
kidney
221
epithelium
169
heart
157
liver
101
bone element
86
connective tissue
79
vasculature
78
blood vessel
56
artery
55
eye
54
brain
46
adipose tissue
31
limb
24
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
5
gonad
5
ovary
5
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
79
AMP
Genome assembly (visualization)
43
GRCh38
12
hg19
Lab
79
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bigWig
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
79 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
Hi-C
total RNA-seq
RRBS
WGBS
pCHi-C
tissue
coronary artery
35
2
1
aorta
2
4
1
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
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cell line
smooth muscle cell of the coronary artery
8
2
primary cell
endothelial cell of umbilical vein
3
2
choroid plexus epithelial cell
1
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