Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ChIP-seq
30
ATAC-seq
9
total RNA-seq
pCHi-C
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
49
DNA binding
30
DNA accessibility
11
Transcription
4
3D chromatin structure
Target of assay
37
control
histone
34
histone modification
19
broad histone mark
15
narrow histone mark
12
transcription factor
5
RNA binding protein
Date released
23
May, 2021
19
August, 2021
13
February, 2023
8
August, 2017
8
December, 2017
8
February, 2018
5
November, 2019
4
February, 2021
4
October, 2019
2
December, 2019
2
March, 2020
Available data
212
bam
bigWig
129
tsv
75
fastq
54
bed narrowPeak
17
bed bed3+
14
tagAlign
7
bed bedgraph
5
bed bed3
5
bigBed narrowPeak
4
bedpe bed3+
4
hic
3
txt
1
bed broadPeak
1
bigBed broadPeak
Organism
96
Homo sapiens
Biosample type
874
tissue
451
primary cell
133
cell line
96
in vitro differentiated cells
3
stem cell
Organ
27
connective tissue
7
embryo
4
epithelium
1
liver
1
pancreas
Project
96
AMP
Genome assembly (visualization)
41
hg19
22
GRCh38
Lab
72
AMP-T2D consortium
22
Kyle Gaulton, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
19
inconsistent ontology term
2
audit script error
files.file_type!
bigWig
target.investigated_as!
histone
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
96 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
embryonic stem cell
18
5
neural progenitor cell
7
10
adipocyte
8
5
1
1
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
cardiomyocytes (cardiac muscle cell)
1
2
2
+ See 15 more…
See all biosamples
Download