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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
single cell RNA-seq
74
ATAC-seq
59
total RNA-seq
13
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
80
DNA accessibility
59
Transcription
13
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
12
control
1
broad histone mark
1
histone
1
histone modification
Date released
201
February, 2023
166
August, 2021
146
February, 2021
146
May, 2022
139
August, 2017
107
October, 2019
84
May, 2021
81
May, 2020
68
November, 2017
44
March, 2020
30
November, 2019
29
October, 2018
25
February, 2020
23
July, 2019
23
May, 2019
22
December, 2017
16
January, 2021
16
September, 2020
14
April, 2019
12
May, 2023
11
November, 2020
10
April, 2020
9
October, 2017
8
February, 2018
8
June, 2019
6
November, 2018
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
4
January, 2019
4
July, 2018
4
October, 2022
2
December, 2019
1
August, 2018
1
August, 2022
Available data
95
bed narrowPeak
64
xls
49
bam
49
txt
bigWig
25
tsv
24
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
165
Homo sapiens
Biosample type
123
tissue
22
cell line
20
in vitro differentiated cells
1
primary cell
Organ
122
kidney
18
liver
4
pancreas
3
connective tissue
3
epithelium
1
adipose tissue
Project
166
AMP
Genome assembly (visualization)
74
GRCh38
14
hg19
Lab
120
Katalin Susztak, Upenn
22
AMP-T2D consortium
22
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
files.file_type!
bigWig
target.investigated_as!
transcription factor
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
166 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
64
49
6
1
islet of Langerhans
1
1
subcutaneous adipose tissue
1
cell line
HepG2
9
4
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
8
adipocyte
1
osteoblast
1
primary cell
hepatocyte
1
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