Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
ATAC-seq
41
WGBS
34
single cell RNA-seq
26
total RNA-seq
22
snATAC-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
79
DNA accessibility
64
Transcription
41
DNA methylation
1
3D chromatin structure
Date released
272
August, 2021
202
February, 2023
180
May, 2022
164
February, 2021
139
August, 2017
107
October, 2019
84
May, 2021
81
May, 2020
68
November, 2017
56
September, 2020
47
September, 2023
44
March, 2020
30
November, 2019
29
October, 2018
25
February, 2020
23
July, 2019
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
May, 2023
14
April, 2019
11
November, 2020
9
October, 2017
8
February, 2018
8
June, 2019
7
November, 2018
6
September, 2017
5
December, 2018
5
December, 2019
5
March, 2019
5
March, 2023
4
January, 2019
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
September, 2018
Available data
134
zippedFastqFolder
38
bed narrowPeak
24
bam
24
fastq
bigWig
7
txt
1
bed bed3+
1
hic
Organism
181
Homo sapiens
Biosample type
135
primary cell
46
tissue
2
cell line
2
stem cell
Organ
104
pancreas
80
epithelium
20
liver
2
musculature of body
Project
134
HPAP
46
AMP
4
community
1
ITG
Genome assembly (visualization)
19
hg19
1
GRCh38
Lab
134
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
4
Anna Gloyn, Oxford
2
AMP-T2D consortium
1
ITG
Audit category:
1
audit script error
files.file_type!
bigWig
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
185 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
chondrocytes
1
tissue
islet of Langerhans
18
6
liver
20
skeletal muscle tissue
1
1
cell line
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
Download