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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ATAC-seq
59
total RNA-seq
14
single cell RNA-seq
13
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
80
DNA accessibility
73
Transcription
13
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
12
control
1
broad histone mark
1
histone
1
histone modification
Date released
180
August, 2021
180
May, 2022
166
February, 2023
154
February, 2021
139
August, 2017
106
October, 2019
84
May, 2021
81
May, 2020
68
November, 2017
56
September, 2020
47
September, 2023
39
March, 2020
30
November, 2019
29
October, 2018
22
December, 2017
22
February, 2020
19
April, 2020
19
July, 2019
17
May, 2019
16
January, 2021
15
May, 2023
11
November, 2020
9
October, 2017
8
February, 2018
7
November, 2018
6
June, 2019
6
September, 2017
5
December, 2018
5
December, 2019
5
March, 2019
5
March, 2023
4
April, 2019
4
January, 2019
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
September, 2018
Available data
95
bed narrowPeak
64
xls
57
txt
49
bam
bigWig
31
tsv
24
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
179
Homo sapiens
Biosample type
137
tissue
22
cell line
20
in vitro differentiated cells
1
primary cell
Organ
130
kidney
heart
18
liver
6
blood vessel
6
vasculature
4
pancreas
3
connective tissue
3
epithelium
2
artery
1
adipose tissue
Project
180
AMP
Genome assembly (visualization)
74
GRCh38
14
hg19
Lab
128
Katalin Susztak, Upenn
28
AMP-T2D consortium
22
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
files.file_type!
bigWig
target.investigated_as!
transcription factor
organ_slims!
heart
BIOSAMPLE
ASSAY
180 results
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Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
64
49
8
6
1
aorta
4
islet of Langerhans
1
1
pulmonary artery
2
subcutaneous adipose tissue
1
cell line
HepG2
9
4
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
8
adipocyte
1
osteoblast
1
primary cell
hepatocyte
1
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