Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ChIP-seq
6
ATAC-seq
4
Hi-C
3
total RNA-seq
Assay category
26
DNA binding
6
DNA accessibility
4
3D chromatin structure
3
Transcription
Target of assay
24
control
2
histone
2
histone modification
2
narrow histone mark
Date released
17
October, 2019
6
February, 2021
5
December, 2017
4
July, 2019
3
February, 2018
3
February, 2020
1
May, 2019
Available data
147
bam
bigWig
103
bed narrowPeak
84
bigBed narrowPeak
39
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
24
fastq
21
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
39
Homo sapiens
Biosample type
31
tissue
8
in vitro differentiated cells
Organ
323
pancreas
223
epithelium
222
kidney
169
heart
164
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
39
AMP
Genome assembly (visualization)
7
GRCh38
7
hg19
Lab
39
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bigWig
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
39 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
Hi-C
total RNA-seq
tissue
tibial nerve
11
1
tibial artery
5
1
gastrocnemius medialis
4
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
+ See 6 more…
in vitro differentiated cells
pancreatic endoderm
6
Hepatic endoderm
2
See all biosamples
Download