Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ATAC-seq
23
ChIP-seq
6
single cell RNA-seq
3
Hi-C
3
total RNA-seq
2
RRBS
1
WGBS
1
pCHi-C
Assay category
43
DNA accessibility
23
DNA binding
9
Transcription
3
3D chromatin structure
3
DNA methylation
Target of assay
20
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
35
February, 2023
11
May, 2019
11
October, 2019
10
February, 2021
6
August, 2021
3
February, 2020
3
July, 2019
3
March, 2020
Available data
177
bam
bigWig
124
bed narrowPeak
78
bigBed narrowPeak
69
tsv
15
bed broadPeak
15
bigBed broadPeak
13
bed bed3+
4
fastq
3
bed bedMethyl
3
bigBed bedMethyl
3
hic
2
bedpe bed3+
2
hdf5
2
tagAlign
1
tar
Organism
82
Homo sapiens
Biosample type
64
tissue
10
cell line
8
primary cell
Organ
323
pancreas
223
epithelium
222
kidney
169
heart
164
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
64
brain
56
artery
55
eye
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
82
AMP
Genome assembly (visualization)
43
GRCh38
13
hg19
Lab
82
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bigWig
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
82 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
ChIP-seq
single cell RNA-seq
Hi-C
total RNA-seq
RRBS
WGBS
pCHi-C
tissue
coronary artery
35
2
1
aorta
2
4
1
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
8
2
primary cell
endothelial cell of umbilical vein
5
2
choroid plexus epithelial cell
1
See all biosamples
Download