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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
DNase-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
WGBS
Assay category
66
DNA binding
8
DNA accessibility
7
Transcription
4
3D chromatin structure
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
65
October, 2019
7
May, 2019
6
February, 2021
4
July, 2019
3
February, 2020
Available data
77
bam
56
bed narrowPeak
54
bigWig
48
bigBed narrowPeak
7
tsv
Organism
85
Homo sapiens
Biosample type
85
tissue
Organ
884
pancreas
780
liver
669
connective tissue
483
adipose tissue
455
epithelium
355
heart
273
kidney
254
brain
223
vasculature
219
blood vessel
159
bone element
137
artery
85
limb
69
blood
69
bodily fluid
62
musculature of body
57
eye
41
nerve
37
embryo
22
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
85
AMP
Genome assembly (visualization)
60
hg19
59
GRCh38
Lab
85
AMP-T2D consortium
files.file_type!
cool
assay_title!
WGBS
DNase-seq
BIOSAMPLE
ASSAY
85 results
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ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
tissue
tibial nerve
35
1
5
tibial artery
23
1
1
muscle of leg
7
gastrocnemius medialis
1
4
distal epiphysis of femur
1
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