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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
total RNA-seq
141
single cell RNA-seq
88
ChIP-seq
47
WGBS
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
342
Transcription
DNA accessibility
88
DNA binding
47
DNA methylation
1
3D chromatin structure
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
153
May, 2021
86
February, 2023
74
May, 2022
56
September, 2020
47
September, 2023
45
May, 2020
18
February, 2021
9
April, 2020
7
March, 2020
5
March, 2023
Available data
186
bam
186
bigWig
132
fastq
104
tsv
93
zippedFastqFolder
88
bed narrowPeak
84
tagAlign
4
hic
3
bedpe bed3+
cool
Organism
496
Homo sapiens
Biosample type
421
primary cell
66
tissue
11
cell line
2
stem cell
Organ
113
pancreas
104
epithelium
47
kidney
9
lung
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
224
HPAP
215
T1D
47
KPMP
9
LungMap
4
community
1
ITG
Genome assembly (visualization)
187
GRCh38
186
hg19
Lab
224
Klaus Kaestner, Upenn
207
Kyle Gaulton, UCSD
47
KPMP
9
Xin Sun, UCSD
8
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
9
inconsistent ontology term
files.file_type!
cool
award.project!
AMP
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
500 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
WGBS
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
84
1
Langerhans cell
85
pancreatic alpha cell
42
31
exocrine cell
39
pancreatic beta cell
11
16
+ See 35 more…
tissue
kidney
47
islet of Langerhans
7
2
lung
9
thymus
1
cell line
EndoC_BH1
2
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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