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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
484
ChIP-seq
113
total RNA-seq
29
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
113
Transcription
Target of assay
3
control
3
nucleotide modification
Date released
78
February, 2021
17
August, 2021
6
November, 2020
5
January, 2019
4
March, 2020
4
May, 2021
4
October, 2019
1
November, 2019
Available data
113
tsv
104
bam
104
bigWig
5
fastq
Organism
119
Homo sapiens
Biosample type
1035
tissue
247
primary cell
136
in vitro differentiated cells
119
cell line
Organ
52
artery
52
blood vessel
52
heart
52
vasculature
40
epithelium
39
pancreas
14
liver
8
embryo
4
kidney
Project
117
AMP
2
T1D
Genome assembly (visualization)
104
GRCh38
104
hg19
Lab
104
AMP-T2D consortium
9
Bing Ren, UCSD
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
42
inconsistent ontology term
files.file_type!
cool
BIOSAMPLE
ASSAY
119 results
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total RNA-seq
MeRIP-seq
cell line
smooth muscle cell of the coronary artery
52
EndoC_BH1
33
6
HepG2
14
H1-hESC
8
early embryonic cell
2
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
glomerular visceral epithelial cell
1
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