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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
Hi-C
Assay category
10
3D chromatin structure
Date released
March, 2020
4
October, 2019
2
August, 2021
2
November, 2019
1
March, 2019
1
March, 2023
Available data
3376
bam
3109
bigWig
1774
bed narrowPeak
1555
tsv
1358
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
13
hic
12
bed bed3
11
bedpe bed3+
8
csv
7
bed bedgraph
5
hdf5
4
tar
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
10
Homo sapiens
Biosample type
4
tissue
2
cell line
2
in vitro differentiated cells
2
primary cell
Organ
3
pancreas
2
epithelium
1
blood vessel
1
heart
1
kidney
1
liver
1
vasculature
1
vein
Project
9
AMP
1
ITG
Genome assembly (visualization)
9
hg19
1
GRCh38
Lab
6
AMP-T2D consortium
2
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
3
inconsistent ontology term
1
audit script error
files.file_type!
cool
month_released!
March, 2020
BIOSAMPLE
ASSAY
10 results
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Clear Filters
Hi-C
tissue
islet of Langerhans
2
heart
1
kidney
1
cell line
EndoC_BH1
1
HepG2
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
primary cell
chondrocytes
1
endothelial cell of umbilical vein
1
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