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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
total RNA-seq
11
ATAC-seq
2
RRBS
2
small RNA-seq
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
46
Transcription
13
DNA accessibility
2
DNA methylation
Date released
188
August, 2017
157
July, 2018
104
May, 2022
72
September, 2018
61
May, 2021
56
February, 2023
55
November, 2019
53
October, 2018
39
April, 2018
32
February, 2021
19
September, 2020
18
October, 2019
14
March, 2020
11
September, 2017
10
November, 2020
8
January, 2021
7
August, 2020
7
November, 2018
6
July, 2019
5
March, 2019
5
October, 2017
4
August, 2021
4
June, 2019
3
August, 2018
2
May, 2019
1
August, 2022
1
February, 2020
1
June, 2018
Available data
37
fastq
4
bam
4
bigWig
4
tsv
2
bed bedMethyl
2
bigBed bedMethyl
Organism
61
Homo sapiens
Biosample type
37
primary cell
24
tissue
1
cell line
Organ
65
epithelium
62
pancreas
61
heart
47
vasculature
46
blood vessel
38
artery
32
connective tissue
32
eye
19
brain
13
adipose tissue
11
kidney
10
liver
10
musculature of body
8
bone element
8
skeleton
5
limb
2
pericardium
Project
37
HPAP
18
T1D
7
AMP
Genome assembly (visualization)
6
hg19
4
GRCh38
Lab
37
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
7
AMP-T2D consortium
files.file_type!
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BIOSAMPLE
ASSAY
62 results
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Clear Filters
total RNA-seq
ATAC-seq
RRBS
small RNA-seq
snATAC-seq
CRISPR genome editing followed by sgRNA sequencing
primary cell
pancreatic alpha cell
27
pancreatic beta cell
10
tissue
islet of Langerhans
5
11
1
2
body of pancreas
2
2
pancreas
1
cell line
EndoC_BH1
1
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