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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
153
ChIP-seq
1
Hi-C
Assay category
481
Transcription
153
DNA binding
34
DNA accessibility
7
DNA methylation
1
3D chromatin structure
Target of assay
78
histone
78
histone modification
44
broad histone mark
40
transcription factor
35
control
33
narrow histone mark
10
RNA binding protein
2
chromatin remodeller
Date released
117
August, 2017
23
October, 2018
12
June, 2019
1
July, 2019
1
October, 2019
Available data
102
bam
90
fastq
76
bigWig
58
bed narrowPeak
22
tagAlign
15
bigBed narrowPeak
12
bed bed3+
1
bed broadPeak
1
hdf5
Organism
154
Homo sapiens
Biosample type
74
tissue
67
in vitro differentiated cells
13
primary cell
Organ
556
liver
224
pancreas
221
brain
154
connective tissue
137
heart
134
epithelium
107
vasculature
104
blood vessel
73
adipose tissue
70
limb
60
blood
60
bodily fluid
53
kidney
45
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
19
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
154
AMP
Genome assembly (visualization)
77
hg19
75
GRCh38
Lab
154
AMP-T2D consortium
Audit category:
11
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
files.file_type!
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BIOSAMPLE
ASSAY
154 results
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ChIP-seq
Hi-C
tissue
subcutaneous abdominal adipose tissue
36
subcutaneous adipose tissue
12
white adipose tissue
12
omental fat pad
11
adipose tissue
2
+ See 1 more…
in vitro differentiated cells
adipocyte
67
primary cell
mesenchymal stem cell
7
cardiac fibroblast
5
brain pericyte
1
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