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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
ChIP-seq
78
total RNA-seq
74
ATAC-seq
8
DNase-seq
6
single cell RNA-seq
5
pCHi-C
2
WGBS
1
Hi-C
Assay category
84
Transcription
82
DNA accessibility
81
DNA binding
2
DNA methylation
1
3D chromatin structure
Target of assay
56
histone
56
histone modification
36
broad histone mark
20
narrow histone mark
18
control
7
transcription factor
3
RNA binding protein
Date released
66
February, 2021
66
February, 2023
50
May, 2019
47
October, 2019
7
July, 2019
6
August, 2021
6
June, 2019
4
February, 2020
3
March, 2020
Available data
156
bam
142
bed narrowPeak
129
bigWig
71
tsv
65
bigBed narrowPeak
8
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
6
tagAlign
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hic
Organism
255
Homo sapiens
Biosample type
189
tissue
66
cell line
primary cell
Organ
777
liver
645
connective tissue
600
pancreas
489
adipose tissue
380
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
255
AMP
Genome assembly (visualization)
172
GRCh38
164
hg19
Lab
255
AMP-T2D consortium
files.file_type!
cool
biosample_type!
primary cell
BIOSAMPLE
ASSAY
255 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
pCHi-C
WGBS
Hi-C
tissue
coronary artery
5
1
36
2
tibial artery
23
1
1
2
aorta
13
1
4
1
2
1
islet of Langerhans
2
14
1
4
retina
3
15
3
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cell line
smooth muscle cell of the coronary artery
6
52
8
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