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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
ChIP-seq
36
total RNA-seq
6
pCHi-C
5
ATAC-seq
4
small RNA-seq
3
Hi-C
3
RRBS
3
single cell RNA-seq
Assay category
51
DNA binding
43
Transcription
5
DNA accessibility
3
3D chromatin structure
3
DNA methylation
Target of assay
32
control
22
histone
22
histone modification
13
narrow histone mark
9
broad histone mark
Date released
32
October, 2019
27
November, 2017
18
July, 2019
13
February, 2020
10
October, 2017
5
February, 2023
3
May, 2019
2
March, 2020
1
June, 2019
Available data
250
bam
bed narrowPeak
228
bigWig
133
bigBed narrowPeak
118
tagAlign
51
bed broadPeak
42
bigBed broadPeak
39
bed bed3+
31
tsv
21
fastq
3
bed bedMethyl
3
bigBed bedMethyl
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
111
Homo sapiens
Biosample type
99
tissue
12
primary cell
Organ
729
pancreas
609
connective tissue
478
adipose tissue
370
epithelium
350
liver
202
heart
171
kidney
151
bone element
103
vasculature
101
blood vessel
83
brain
67
artery
36
musculature of body
30
limb
28
eye
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
111
AMP
Genome assembly (visualization)
24
hg19
16
GRCh38
Lab
111
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
cool
bed narrowPeak
BIOSAMPLE
ASSAY
111 results
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ChIP-seq
total RNA-seq
pCHi-C
ATAC-seq
small RNA-seq
Hi-C
RRBS
single cell RNA-seq
tissue
islet of Langerhans
2
14
4
2
brain
9
1
1
1
cingulate gyrus
7
layer of hippocampus
6
cerebellum (Hemisphere)
2
1
1
1
+ See 26 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
retinal pigment epithelial cell
1
1
+ See 2 more…
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