Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
415
ChIP-seq
50
ATAC-seq
9
DNase-seq
Assay category
415
DNA binding
59
DNA accessibility
Target of assay
330
transcription factor
82
histone modification
81
histone
81
recombinant protein
57
RNA binding protein
52
narrow histone mark
29
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
249
November, 2017
51
November, 2018
50
December, 2017
27
February, 2023
27
May, 2020
20
May, 2022
18
August, 2017
17
August, 2021
8
June, 2019
6
October, 2019
1
February, 2021
Available data
688
bam
628
bigWig
474
bed narrowPeak
465
fastq
364
bigBed narrowPeak
179
tsv
86
tagAlign
67
bed broadPeak
67
bigBed broadPeak
17
bed bed3+
4
bed bedMethyl
4
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
474
Homo sapiens
Biosample type
308
cell line
143
tissue
14
in vitro differentiated cells
9
primary cell
Organ
441
liver
214
pancreas
203
brain
191
heart
183
kidney
151
epithelium
133
vasculature
129
blood vessel
92
limb
75
connective tissue
74
artery
60
musculature of body
54
blood
54
bodily fluid
33
eye
27
nerve
18
ureter
14
embryo
14
spleen
13
adipose tissue
13
vein
8
bone element
8
skeleton
1
pituitary gland
Project
474
AMP
Genome assembly (visualization)
470
hg19
373
GRCh38
Lab
440
AMP-T2D consortium
20
Karen Mohlke, UNC
14
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
files.file_type!
cool
BIOSAMPLE
ASSAY
474 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
307
1
tissue
liver
82
20
2
retina
15
3
pigmented layer of retina
12
right lobe of liver
7
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
1
retinal pigment epithelial cell
2
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
Download