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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
424
total RNA-seq
144
ChIP-seq
42
ATAC-seq
42
DNase-seq
7
WGBS
6
pCHi-C
4
Hi-C
3
small RNA-seq
1
RNA microarray
1
RRBS
Assay category
427
Transcription
144
DNA binding
84
DNA accessibility
8
DNA methylation
4
3D chromatin structure
Target of assay
84
histone
84
histone modification
54
broad histone mark
42
control
30
narrow histone mark
18
transcription factor
6
RNA binding protein
Date released
392
February, 2021
91
October, 2019
57
August, 2017
40
June, 2019
32
February, 2023
23
October, 2018
18
July, 2019
7
May, 2019
6
February, 2020
1
August, 2018
1
August, 2021
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
563
bam
522
bigWig
413
tsv
138
bed narrowPeak
100
bigBed narrowPeak
46
bed bed3+
44
fastq
43
bed broadPeak
42
bigBed broadPeak
8
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
1
bedpe bed3+
Organism
673
Homo sapiens
Biosample type
666
tissue
7
primary cell
1
in vitro differentiated cells
Organ
943
pancreas
791
liver
684
connective tissue
521
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
674
AMP
Genome assembly (visualization)
556
hg19
526
GRCh38
Lab
674
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
cool
BIOSAMPLE
ASSAY
674 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RNA microarray
RRBS
tissue
adipose tissue
382
2
3
3
1
tibial nerve
5
35
1
2
subcutaneous abdominal adipose tissue
36
3
tibial artery
1
23
1
2
islet of Langerhans
14
3
1
4
+ See 18 more…
primary cell
retinal pigment epithelial cell
3
1
1
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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