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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
12
ATAC-seq
4
total RNA-seq
2
DNase-seq
1
FAIRE-seq
Assay category
17
DNA binding
15
DNA accessibility
4
Transcription
3D chromatin structure
Target of assay
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
2
control
Date released
20
October, 2019
8
February, 2021
8
February, 2023
Available data
28
bam
21
bed narrowPeak
15
bigWig
13
bigBed narrowPeak
4
bed bed3
4
bed broadPeak
4
bigBed broadPeak
4
txt
2
bed bed3+
1
tar
Organism
36
Homo sapiens
Biosample type
20
primary cell
16
tissue
Organ
937
pancreas
787
liver
683
connective tissue
516
epithelium
491
adipose tissue
390
heart
353
kidney
283
brain
231
vasculature
225
blood vessel
159
bone element
141
artery
118
limb
90
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
20
lung
20
vein
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
36
AMP
Genome assembly (visualization)
27
hg19
20
GRCh38
Lab
36
AMP-T2D consortium
files.file_type!
cool
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
36 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
17
2
1
tissue
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
pubis
1
1
distal epiphysis
1
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