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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
10
snATAC-seq
9
single cell RNA-seq
WGBS
2
pCHi-C
1
ATAC-seq
1
DNase-seq
Assay category
20
DNA binding
12
DNA accessibility
9
Transcription
Target of assay
8
control
6
histone
6
histone modification
6
transcription factor
4
broad histone mark
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
19
April, 2020
7
December, 2018
7
January, 2019
7
November, 2018
2
March, 2020
1
October, 2017
Available data
22
bam
22
fastq
14
bed narrowPeak
14
bigWig
13
bigBed narrowPeak
2
tsv
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
42
Homo sapiens
Biosample type
43
tissue
Organ
892
pancreas
786
liver
678
connective tissue
485
adipose tissue
474
epithelium
385
heart
354
kidney
286
brain
234
vasculature
228
blood vessel
159
bone element
141
artery
121
limb
95
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
24
AMP
19
LungMap
Genome assembly (visualization)
14
GRCh38
14
hg19
Lab
24
AMP-T2D consortium
19
Xin Sun, UCSD
files.file_type!
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assay_title!
WGBS
BIOSAMPLE
ASSAY
43 results
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ChIP-seq
snATAC-seq
single cell RNA-seq
pCHi-C
ATAC-seq
DNase-seq
tissue
spleen
20
1
1
1
lung
10
9
1
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