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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ChIP-seq
2
Hi-C
2
WGBS
1
ATAC-seq
1
FAIRE-seq
1
pCHi-C
Assay category
35
DNA binding
2
3D chromatin structure
2
DNA accessibility
2
DNA methylation
Target of assay
19
histone
19
histone modification
11
broad histone mark
10
control
8
narrow histone mark
6
transcription factor
3
other context
3
other post-translational modification
Date released
17
October, 2019
8
November, 2018
7
December, 2018
7
January, 2019
2
March, 2020
1
October, 2017
Available data
44
bam
31
bigWig
27
bed narrowPeak
26
bigBed narrowPeak
24
fastq
5
bed broadPeak
bigBed broadPeak
3
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
2
hic
1
bedpe bed3+
1
tar
1
tsv
Organism
42
Homo sapiens
Biosample type
24
tissue
18
primary cell
Organ
936
pancreas
728
liver
675
connective tissue
499
epithelium
489
adipose tissue
323
heart
276
kidney
248
brain
219
vasculature
217
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
63
musculature of body
57
eye
41
nerve
37
embryo
24
spleen
20
lung
18
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
42
AMP
Genome assembly (visualization)
26
hg19
25
GRCh38
Lab
42
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
cool
bigBed broadPeak
BIOSAMPLE
ASSAY
42 results
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ChIP-seq
Hi-C
WGBS
ATAC-seq
FAIRE-seq
pCHi-C
tissue
spleen
20
2
1
1
primary cell
endothelial cell of umbilical vein
15
2
1
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