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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
403
total RNA-seq
218
ChIP-seq
152
ATAC-seq
74
single cell RNA-seq
51
WGBS
11
snATAC-seq
10
MeRIP-seq
9
Hi-C
8
DNase-seq
2
Capture-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
152
DNA accessibility
2
Transcription
Date released
57
May, 2022
20
November, 2019
16
May, 2021
14
September, 2018
11
February, 2023
7
August, 2020
5
October, 2017
5
September, 2017
4
March, 2019
4
March, 2020
3
August, 2017
3
October, 2019
3
September, 2020
2
July, 2019
Available data
67
bam
64
bed narrowPeak
56
fastq
43
bigWig
39
zippedFastqFolder
22
bigBed narrowPeak
4
tsv
2
bed broadPeak
Organism
154
Homo sapiens
Biosample type
71
primary cell
64
tissue
19
cell line
Organ
154
pancreas
103
epithelium
76
kidney
48
heart
46
blood vessel
46
vasculature
45
artery
28
connective tissue
28
eye
26
liver
12
bone element
12
skeleton
9
adipose tissue
8
brain
8
limb
3
musculature of body
1
blood
1
bodily fluid
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
94
AMP
49
HPAP
11
T1D
Genome assembly (visualization)
73
hg19
61
GRCh38
Lab
71
AMP-T2D consortium
49
Klaus Kaestner, Upenn
29
Kyle Gaulton, UCSD
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
19
inconsistent ontology term
files.file_type!
csv
BIOSAMPLE
ASSAY
154 results
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ATAC-seq
small RNA-seq
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
pancreatic acinar cell
9
pancreatic ductal cell
4
tissue
islet of Langerhans
58
body of pancreas
4
2
cell line
EndoC_BH1
19
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