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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ATAC-seq
5
Hi-C
Assay category
64
DNA accessibility
5
3D chromatin structure
Date released
64
August, 2021
4
July, 2019
1
October, 2019
Available data
3101
bam
2910
bigWig
1685
bed narrowPeak
1469
tsv
1217
fastq
1025
bigBed narrowPeak
358
tagAlign
321
bed broadPeak
284
bigBed broadPeak
248
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
hic
16
bedpe bed3+
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
69
Homo sapiens
Biosample type
64
tissue
4
primary cell
1
cell line
Organ
64
kidney
3
brain
2
blood vessel
2
epithelium
2
vasculature
1
connective tissue
1
liver
1
pancreas
Project
69
AMP
Genome assembly (visualization)
65
GRCh38
5
hg19
Lab
64
Katalin Susztak, Upenn
5
AMP-T2D consortium
Audit category:
1
inconsistent assembly
files.file_type!
csv
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
69 results
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ATAC-seq
Hi-C
tissue
kidney
64
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
cell line
Panc1
1
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