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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
38
ATAC-seq
26
total RNA-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
1
snATAC-seq
Assay category
70
DNA binding
49
DNA accessibility
27
Transcription
7
DNA methylation
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
661
February, 2021
397
November, 2017
352
August, 2017
315
August, 2021
280
October, 2019
194
May, 2020
193
May, 2021
163
June, 2019
120
July, 2018
117
February, 2023
115
May, 2019
94
December, 2017
87
November, 2018
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
63
March, 2020
61
November, 2019
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
10
November, 2020
8
January, 2018
8
January, 2021
6
April, 2018
6
September, 2017
5
December, 2019
5
March, 2019
4
March, 2023
1
August, 2018
1
August, 2022
1
October, 2022
Available data
111
bam
111
bed narrowPeak
111
fastq
100
bigWig
73
bigBed narrowPeak
10
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
7
txt
Organism
153
Homo sapiens
Biosample type
primary cell
92
tissue
61
cell line
Organ
93
liver
31
pancreas
15
blood
15
bodily fluid
9
spleen
2
brain
2
musculature of body
1
adipose tissue
1
connective tissue
Project
153
AMP
Genome assembly (visualization)
110
hg19
79
GRCh38
Lab
89
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
1
audit script error
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
files.file_type!
csv
biosample_type!
primary cell
BIOSAMPLE
ASSAY
153 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
snATAC-seq
tissue
liver
4
20
20
2
islet of Langerhans
18
6
spleen
6
1
2
body of pancreas
2
2
pancreas
2
1
+ See 4 more…
cell line
HepG2
45
1
GM12878
15
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