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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
236
ChIP-seq
95
DNase-seq
79
ATAC-seq
67
total RNA-seq
59
single cell RNA-seq
6
snATAC-seq
5
small RNA-seq
3
snDrop-seq
2
FAIRE-seq
2
RNA microarray
2
RRBS
2
pCHi-C
1
Hi-C
Assay category
236
DNA binding
182
DNA accessibility
131
Transcription
2
DNA methylation
1
3D chromatin structure
Target of assay
204
histone
204
histone modification
124
narrow histone mark
80
broad histone mark
31
control
1
RNA binding protein
1
transcription factor
Date released
128
August, 2021
93
June, 2019
90
October, 2019
82
November, 2017
47
September, 2023
28
May, 2019
23
April, 2019
16
October, 2017
15
July, 2019
14
May, 2023
12
February, 2020
3
December, 2019
3
February, 2021
2
March, 2020
2
November, 2018
1
February, 2023
Available data
345
bed narrowPeak
324
bam
293
bigWig
203
bigBed narrowPeak
118
tagAlign
104
bed broadPeak
95
bed bed3+
95
bigBed broadPeak
64
xls
62
txt
35
tsv
12
fastq
csv
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
hic
1
tagAlign bed3+
Organism
559
Homo sapiens
Biosample type
559
tissue
57
primary cell
19
cell line
Organ
547
connective tissue
505
pancreas
488
adipose tissue
360
liver
313
heart
294
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
512
AMP
47
KPMP
Genome assembly (visualization)
368
GRCh38
235
hg19
Lab
370
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
Audit category:
3
inconsistent ontology term
2
audit script error
Audit category:
4
missing controlled_by
files.file_type!
csv
BIOSAMPLE
ASSAY
559 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
small RNA-seq
snDrop-seq
FAIRE-seq
RNA microarray
RRBS
pCHi-C
Hi-C
tissue
kidney
27
13
75
49
59
6
1
1
1
brain
20
14
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
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