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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
137
ATAC-seq
22
Hi-C
19
RRBS
11
ChIP-seq
4
pCHi-C
2
Capture-C
1
snATAC-seq
1
total RNA-seq
Assay category
138
DNA accessibility
22
3D chromatin structure
19
DNA methylation
11
DNA binding
1
Transcription
Target of assay
9
control
2
histone
2
histone modification
2
narrow histone mark
Date released
42
February, 2023
28
November, 2019
23
February, 2021
19
May, 2022
15
July, 2019
14
August, 2021
13
May, 2021
12
March, 2020
10
October, 2019
6
August, 2017
5
December, 2017
3
March, 2019
3
October, 2022
2
September, 2017
1
May, 2023
1
November, 2020
Available data
bigWig
2998
bam
1598
bed narrowPeak
1402
tsv
1008
fastq
963
bigBed narrowPeak
298
bed broadPeak
262
bigBed broadPeak
250
bed bed3+
238
tagAlign
22
hic
21
bedpe bed3+
19
bed bedMethyl
19
bigBed bedMethyl
12
bed bed3
7
bed bedgraph
5
hdf5
4
tar
4
txt
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
197
Homo sapiens
Biosample type
108
tissue
43
in vitro differentiated cells
32
primary cell
13
cell line
1
stem cell
Organ
51
pancreas
28
eye
26
epithelium
22
connective tissue
13
heart
12
bone element
12
skeleton
12
vasculature
11
blood vessel
8
artery
8
liver
6
limb
6
musculature of body
5
brain
5
kidney
3
adipose tissue
2
vein
1
embryo
1
pericardium
Project
194
AMP
3
HPAP
Genome assembly (visualization)
197
GRCh38
197
hg19
Lab
169
AMP-T2D consortium
18
Kyle Gaulton, UCSD
3
Bing Ren, UCSD
3
Klaus Kaestner, Upenn
2
Struan F.A. Grant, CHOP
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
Audit category:
22
inconsistent ontology term
5
audit script error
1
inconsistent replicate
files.file_type!
csv
bigWig
BIOSAMPLE
ASSAY
197 results
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Clear Filters
ATAC-seq
Hi-C
RRBS
ChIP-seq
pCHi-C
Capture-C
snATAC-seq
total RNA-seq
tissue
islet of Langerhans
39
2
1
2
retina
15
pigmented layer of retina
12
liver
1
1
1
skeletal muscle tissue
2
1
+ See 25 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
5
1
1
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
cardiomyocytes (cardiac muscle cell)
1
2
1
+ See 9 more…
primary cell
monocyte
13
endothelial cell of umbilical vein
2
osteoblast
1
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
+ See 13 more…
cell line
smooth muscle cell of the coronary artery
8
HepG2
1
1
1
EndoC_BH1
1
1
stem cell
hESC
1
See all biosamples
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