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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
200
ATAC-seq
185
single cell RNA-seq
149
total RNA-seq
145
ChIP-seq
48
snATAC-seq
47
WGBS
29
DNase-seq
10
RRBS
8
Hi-C
2
small RNA-seq
1
DNAme array
1
pCHi-C
Assay category
336
Transcription
277
DNA accessibility
145
DNA binding
58
DNA methylation
8
3D chromatin structure
Target of assay
108
histone
108
histone modification
59
narrow histone mark
49
broad histone mark
30
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
134
May, 2022
102
May, 2020
88
February, 2023
72
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
31
July, 2019
20
May, 2021
13
October, 2019
9
November, 2017
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2023
Available data
409
bam
409
fastq
383
bigWig
174
tsv
168
bed narrowPeak
153
zippedFastqFolder
96
bigBed narrowPeak
45
bed broadPeak
45
bigBed broadPeak
33
bed bed3+
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
4
hic
3
bedpe bed3+
3
cool
csv
1
bed bed3
Organism
825
Homo sapiens
Biosample type
2719
tissue
825
primary cell
657
cell line
347
in vitro differentiated cells
10
stem cell
Organ
406
epithelium
346
pancreas
38
connective tissue
37
vasculature
36
kidney
31
blood vessel
vein
21
brain
14
liver
14
musculature of body
13
heart
5
eye
2
adipose tissue
2
artery
1
pericardium
Project
500
AMP
324
HPAP
1
ITG
Genome assembly (visualization)
396
hg19
344
GRCh38
Lab
500
AMP-T2D consortium
324
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
1
ITG
Audit category:
49
inconsistent ontology term
30
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
files.file_type!
csv
lab.title!
Kyle Gaulton, UCSD
organ_slims!
vein
BIOSAMPLE
ASSAY
825 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
RRBS
Hi-C
small RNA-seq
DNAme array
pCHi-C
primary cell
pancreatic alpha cell
35
12
52
13
31
1
Langerhans cell
85
48
pancreatic beta cell
23
12
21
13
16
1
exocrine cell
39
pancreatic acinar cell
9
12
4
8
1
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