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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
total RNA-seq
124
ATAC-seq
96
single cell RNA-seq
54
snATAC-seq
47
WGBS
10
MeRIP-seq
4
Hi-C
Assay category
237
Transcription
178
DNA accessibility
47
DNA methylation
4
3D chromatin structure
Target of assay
5
control
5
nucleotide modification
Date released
134
May, 2022
128
August, 2021
76
February, 2023
59
September, 2020
45
February, 2021
14
May, 2023
10
November, 2020
7
August, 2020
3
October, 2022
Available data
169
fastq
153
zippedFastqFolder
64
bed narrowPeak
64
xls
57
txt
10
bigWig
6
tsv
4
hic
3
bedpe bed3+
3
cool
Organism
476
Homo sapiens
Biosample type
324
primary cell
146
tissue
6
cell line
Organ
162
pancreas
158
epithelium
142
kidney
Project
324
HPAP
152
AMP
Genome assembly (visualization)
85
GRCh38
4
hg19
Lab
3904
AMP-T2D consortium
343
Kyle Gaulton, UCSD
324
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
6
inconsistent ontology term
files.file_type!
csv
BIOSAMPLE
ASSAY
476 results
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Clear Filters
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
MeRIP-seq
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
1
pancreatic beta cell
11
16
16
1
exocrine cell
39
pancreatic acinar cell
4
1
tissue
kidney
49
75
11
6
1
islet of Langerhans
4
cell line
EndoC_BH1
6
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