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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
191
total RNA-seq
96
ATAC-seq
75
ChIP-seq
1
pCHi-C
Assay category
191
Transcription
96
DNA accessibility
75
DNA binding
Target of assay
34
histone
34
histone modification
30
narrow histone mark
27
control
14
transcription factor
6
RNA binding protein
6
chromatin remodeller
4
broad histone mark
Date released
581
February, 2021
411
August, 2017
406
November, 2017
333
May, 2020
316
August, 2021
309
May, 2021
291
October, 2019
200
May, 2022
194
February, 2023
192
June, 2019
162
July, 2018
117
May, 2019
106
July, 2019
90
December, 2017
87
November, 2018
80
April, 2019
76
October, 2018
72
September, 2018
59
September, 2020
49
April, 2018
47
March, 2020
47
September, 2023
40
May, 2024
39
February, 2018
39
November, 2019
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
2
June, 2018
1
August, 2022
Available data
305
bam
278
bigWig
190
tsv
50
tagAlign
48
bed narrowPeak
30
fastq
21
bigBed narrowPeak
Organism
363
Homo sapiens
Biosample type
200
tissue
139
primary cell
24
cell line
Organ
199
liver
18
blood
18
bodily fluid
7
spleen
Project
322
AMP
41
T1D
Genome assembly (visualization)
278
hg19
229
GRCh38
Lab
322
AMP-T2D consortium
41
Kyle Gaulton, UCSD
Audit category:
inconsistent ontology term
files.file_type!
csv
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
363 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
tissue
liver
143
50
spleen
7
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 22 more…
cell line
GM12878
18
HepG2
5
1
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