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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
215
ChIP-seq
84
RNA microarray
79
total RNA-seq
31
DNase-seq
16
ATAC-seq
4
small RNA-seq
3
pCHi-C
3
single cell RNA-seq
2
Hi-C
2
RRBS
1
FAIRE-seq
Assay category
215
DNA binding
86
Transcription
48
DNA accessibility
2
3D chromatin structure
2
DNA methylation
Target of assay
186
histone
186
histone modification
116
narrow histone mark
70
broad histone mark
30
control
2
RNA binding protein
2
transcription factor
Date released
150
February, 2021
88
November, 2017
86
October, 2019
29
June, 2019
28
May, 2019
17
July, 2019
16
October, 2017
12
February, 2020
9
February, 2023
2
March, 2020
2
November, 2018
1
May, 2021
Available data
305
bam
275
bigWig
208
bed narrowPeak
124
bigBed narrowPeak
118
tagAlign
88
txt
84
tsv
44
bed broadPeak
35
bigBed broadPeak
33
bed bed3+
18
fastq
5
bed bed3
2
bed bedMethyl
2
bigBed bedMethyl
2
hdf5
1
tagAlign bed3+
Organism
440
Homo sapiens
Biosample type
423
tissue
17
primary cell
Organ
946
pancreas
790
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
349
kidney
286
brain
236
vasculature
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
439
AMP
1
T1D
Genome assembly (visualization)
280
GRCh38
229
hg19
Lab
439
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
87
inconsistent ontology term
Audit category:
4
missing controlled_by
files.file_type!
csv
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
440 results
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ChIP-seq
RNA microarray
total RNA-seq
DNase-seq
ATAC-seq
small RNA-seq
pCHi-C
single cell RNA-seq
Hi-C
RRBS
FAIRE-seq
tissue
bone element
84
bone tissue
58
brain
20
1
14
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
+ See 91 more…
primary cell
astrocyte of the cerebellum
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
Purkinje cell
1
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