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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
215
ChIP-seq
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
215
DNA binding
24
Transcription
5
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
transcription factor
Date released
88
November, 2017
86
October, 2019
28
May, 2019
18
July, 2019
16
October, 2017
12
February, 2020
2
March, 2020
1
February, 2023
Available data
208
bam
187
bigWig
168
bed narrowPeak
118
tagAlign
92
bigBed narrowPeak
26
tsv
16
fastq
12
bed broadPeak
3
bed bed3+
3
bigBed broadPeak
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
251
Homo sapiens
Biosample type
238
tissue
13
primary cell
Organ
919
pancreas
635
connective tissue
496
epithelium
472
adipose tissue
446
liver
346
heart
258
kidney
251
brain
216
vasculature
213
blood vessel
159
bone element
132
artery
86
limb
63
musculature of body
56
eye
41
nerve
34
embryo
20
lung
20
vein
18
blood
18
bodily fluid
18
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
251
AMP
Genome assembly (visualization)
182
GRCh38
139
hg19
Lab
251
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
files.file_type!
csv
target.investigated_as!
transcription factor
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
251 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
20
1
1
1
layer of hippocampus
23
substantia nigra
16
1
temporal lobe
15
1
1
caudate nucleus
15
1
+ See 72 more…
primary cell
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
cerebellar granule cell
2
Purkinje cell
1
+ See 1 more…
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