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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
185
ChIP-seq
total RNA-seq
59
single cell RNA-seq
41
WGBS
17
pCHi-C
10
Hi-C
9
RRBS
2
small RNA-seq
1
DNAme array
Assay category
DNA accessibility
185
DNA binding
61
Transcription
51
DNA methylation
10
3D chromatin structure
Target of assay
164
histone
164
histone modification
89
broad histone mark
75
narrow histone mark
19
control
5
RNA binding protein
5
transcription factor
Date released
138
May, 2021
74
May, 2022
31
June, 2019
25
October, 2019
18
July, 2019
18
September, 2020
5
April, 2018
5
May, 2019
4
August, 2021
3
October, 2022
1
February, 2021
1
March, 2020
1
March, 2023
Available data
353
bigWig
345
bam
fastq
226
bed narrowPeak
108
tsv
100
tagAlign
93
zippedFastqFolder
57
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
8
bed bed3+
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
Organism
324
Homo sapiens
Biosample type
1037
tissue
324
primary cell
96
cell line
90
in vitro differentiated cells
6
stem cell
Organ
97
epithelium
49
pancreas
22
vasculature
21
blood vessel
19
vein
18
connective tissue
18
kidney
12
musculature of body
7
brain
6
heart
6
liver
4
eye
1
adipose tissue
1
bone element
1
bone marrow
Project
128
AMP
100
T1D
95
HPAP
1
ITG
Genome assembly (visualization)
194
hg19
141
GRCh38
Lab
133
Kyle Gaulton, UCSD
95
AMP-T2D consortium
95
Klaus Kaestner, Upenn
1
ITG
Audit category:
28
inconsistent ontology term
4
audit script error
files.file_type!
fastq
assay_slims!
DNA accessibility
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
324 results
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ChIP-seq
single cell RNA-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
primary cell
monocyte
85
1
1
Langerhans cell
51
CD8-positive, alpha-beta T cell
33
1
pancreatic alpha cell
25
1
endothelial cell of umbilical vein
17
2
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