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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
ChIP-seq
6
Hi-C
6
total RNA-seq
3
RRBS
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
DNA accessibility
31
DNA binding
9
Transcription
6
3D chromatin structure
4
DNA methylation
Target of assay
26
histone
26
histone modification
16
broad histone mark
10
narrow histone mark
5
control
Date released
24
August, 2017
10
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
2
June, 2019
1
May, 2022
Available data
27
bigWig
20
bed narrowPeak
16
bam
15
tagAlign
13
bed broadPeak
9
tsv
7
bigBed narrowPeak
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
fastq
2
hic
Organism
51
Homo sapiens
Biosample type
46
tissue
5
primary cell
Organ
538
connective tissue
442
adipose tissue
311
heart
306
pancreas
301
liver
228
brain
172
vasculature
171
blood vessel
169
kidney
111
epithelium
92
artery
78
limb
63
bone element
51
musculature of body
40
nerve
29
eye
19
vein
10
lung
8
embryo
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
spleen
Project
51
AMP
Genome assembly (visualization)
29
hg19
13
GRCh38
Lab
51
AMP-T2D consortium
Audit category:
inconsistent ontology term
files.file_type!
fastq
assay_slims!
DNA accessibility
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
51 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
22
1
2
1
1
muscle of leg
7
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
left ventricle myocardium
1
primary cell
skeletal muscle cell
2
1
skeletal muscle satellite cell
1
1
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