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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
185
ChIP-seq
127
total RNA-seq
59
single cell RNA-seq
41
WGBS
17
pCHi-C
10
Hi-C
2
small RNA-seq
1
DNAme array
Assay category
DNA accessibility
188
Transcription
185
DNA binding
42
DNA methylation
10
3D chromatin structure
Target of assay
164
histone
164
histone modification
89
broad histone mark
75
narrow histone mark
19
control
5
RNA binding protein
5
transcription factor
Date released
193
May, 2021
74
May, 2022
47
May, 2020
31
June, 2019
27
October, 2019
22
July, 2019
18
September, 2020
5
April, 2018
5
December, 2019
5
May, 2019
4
August, 2021
4
November, 2020
3
October, 2022
2
February, 2021
1
March, 2020
1
March, 2023
Available data
505
bigWig
495
bam
fastq
258
tsv
226
bed narrowPeak
100
tagAlign
93
zippedFastqFolder
57
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
10
bed bed3+
10
bed bedMethyl
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
Organism
442
Homo sapiens
Biosample type
1957
tissue
442
primary cell
211
in vitro differentiated cells
204
cell line
6
stem cell
Organ
103
epithelium
49
pancreas
27
connective tissue
23
blood vessel
23
vasculature
21
kidney
19
vein
12
musculature of body
10
liver
9
heart
6
brain
3
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
196
T1D
150
AMP
95
HPAP
1
ITG
Genome assembly (visualization)
309
hg19
263
GRCh38
Lab
231
Kyle Gaulton, UCSD
115
AMP-T2D consortium
95
Klaus Kaestner, Upenn
1
ITG
Audit category:
30
inconsistent ontology term
4
audit script error
files.file_type!
fastq
bigBed bedMethyl
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
442 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
DNAme array
primary cell
monocyte
85
54
1
1
Langerhans cell
51
CD8-positive, alpha-beta T cell
33
4
1
pancreatic alpha cell
25
1
endothelial cell of umbilical vein
17
2
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