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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
184
total RNA-seq
3
Hi-C
3
WGBS
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
188
Transcription
DNA binding
DNA accessibility
4
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Date released
144
May, 2020
20
May, 2022
13
August, 2021
10
July, 2019
5
December, 2019
3
March, 2020
2
August, 2017
2
February, 2021
1
February, 2020
1
October, 2019
Available data
174
tsv
164
bigWig
163
bam
fastq
3
bed bedMethyl
3
bigBed bedMethyl
2
bed bed3+
2
bedpe bed3+
2
hic
1
csv
1
hdf5
1
vcf
Organism
201
Homo sapiens
Biosample type
179
tissue
15
cell line
7
primary cell
Organ
490
connective tissue
406
adipose tissue
292
pancreas
201
liver
182
heart
147
bone element
139
kidney
119
epithelium
76
vasculature
75
blood vessel
58
artery
31
brain
24
eye
20
musculature of body
12
limb
10
embryo
10
lung
5
nerve
4
skeleton
2
intestine
2
pericardium
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
201
AMP
Genome assembly (visualization)
162
hg19
157
GRCh38
Lab
168
AMP-T2D consortium
20
Karen Mohlke, UNC
13
Bing Ren, UCSD
files.file_type!
fastq
assay_slims!
DNA accessibility
DNA binding
BIOSAMPLE
ASSAY
201 results
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total RNA-seq
Hi-C
WGBS
pCHi-C
small RNA-seq
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
1
2
1
1
1
right lobe of liver
3
1
2
cell line
HepG2
9
1
2
2
1
primary cell
hepatocyte
5
1
endothelial cell of hepatic sinusoid
1
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