Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
total RNA-seq
49
ChIP-seq
3
Hi-C
3
small RNA-seq
1
RRBS
1
pCHi-C
Assay category
157
Transcription
49
DNA binding
DNA accessibility
3
3D chromatin structure
1
DNA methylation
Target of assay
38
histone
38
histone modification
33
narrow histone mark
11
transcription factor
5
broad histone mark
1
RNA binding protein
Date released
170
May, 2020
18
August, 2021
9
July, 2019
6
October, 2019
5
December, 2019
2
March, 2020
1
February, 2021
Available data
591
bigWig
577
bam
409
bed narrowPeak
fastq
348
bigBed narrowPeak
162
tsv
58
bed broadPeak
58
bigBed broadPeak
42
tagAlign
8
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
hdf5
Organism
211
Homo sapiens
Biosample type
185
tissue
16
cell line
10
primary cell
Organ
487
connective tissue
400
adipose tissue
266
pancreas
211
liver
149
heart
137
vasculature
136
blood vessel
125
brain
110
epithelium
79
artery
58
bone element
56
kidney
52
limb
36
musculature of body
28
nerve
14
vein
10
embryo
3
eye
2
pericardium
1
pituitary gland
Project
211
AMP
Genome assembly (visualization)
211
hg19
184
GRCh38
Lab
196
AMP-T2D consortium
15
Bing Ren, UCSD
files.file_type!
fastq
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
211 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
Hi-C
small RNA-seq
RRBS
pCHi-C
tissue
liver
147
32
1
1
right lobe of liver
2
2
cell line
HepG2
14
1
1
primary cell
hepatocyte
5
3
1
endothelial cell of hepatic sinusoid
1
Download