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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
38
ChIP-seq
2
single cell RNA-seq
1
pCHi-C
Assay category
58
Transcription
DNA accessibility
38
DNA binding
Target of assay
24
histone
24
histone modification
14
broad histone mark
10
narrow histone mark
9
control
5
transcription factor
1
RNA binding protein
Date released
58
February, 2021
27
October, 2019
5
May, 2019
2
August, 2021
2
February, 2020
2
July, 2019
1
March, 2020
Available data
88
bam
79
bigWig
59
tsv
25
bed narrowPeak
21
bigBed narrowPeak
6
tagAlign
Organism
97
Homo sapiens
Biosample type
58
cell line
37
tissue
2
primary cell
Organ
553
connective tissue
442
adipose tissue
363
pancreas
316
heart
301
liver
231
brain
191
kidney
176
epithelium
172
vasculature
171
blood vessel
147
bone element
92
artery
78
limb
59
musculature of body
40
nerve
29
eye
19
vein
10
embryo
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
97
AMP
Genome assembly (visualization)
79
GRCh38
79
hg19
Lab
97
AMP-T2D consortium
files.file_type!
fastq
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
97 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
pCHi-C
cell line
smooth muscle cell of the coronary artery
52
6
tissue
tibial artery
1
23
coronary artery
1
5
islet of Langerhans
4
pulmonary artery
2
ovary
1
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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