Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
107
single cell RNA-seq
total RNA-seq
50
ATAC-seq
49
snATAC-seq
41
WGBS
17
pCHi-C
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
111
Transcription
99
DNA accessibility
DNA binding
41
DNA methylation
4
3D chromatin structure
Date released
134
May, 2022
47
September, 2023
19
April, 2020
18
February, 2023
18
September, 2020
17
May, 2021
16
January, 2021
5
March, 2023
3
October, 2022
Available data
153
zippedFastqFolder
fastq
10
bigWig
6
tsv
4
hic
3
bedpe bed3+
3
cool
Organism
272
Homo sapiens
Biosample type
180
primary cell
88
tissue
7
cell line
2
stem cell
Organ
104
pancreas
83
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
155
HPAP
51
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
3
hg19
1
GRCh38
Lab
155
Klaus Kaestner, Upenn
51
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
4
Anna Gloyn, Oxford
1
ITG
Audit category:
3
audit script error
1
inconsistent ontology term
files.file_type!
fastq
assay_slims!
DNA binding
assay_title!
total RNA-seq
award.project!
AMP
BIOSAMPLE
ASSAY
277 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
51
21
pancreatic alpha cell
22
25
1
pancreatic beta cell
13
16
1
peripheral blood mononuclear cell
8
pancreatic acinar cell
4
1
+ See 16 more…
tissue
kidney
47
lung
9
10
islet of Langerhans
11
6
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
See all biosamples
Download