Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
ATAC-seq
41
WGBS
6
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
2
DNase-seq
2
total RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
RNA microarray
Assay category
71
DNA accessibility
47
DNA methylation
DNA binding
6
3D chromatin structure
2
Transcription
Target of assay
3
control
3
nucleotide modification
Date released
80
May, 2022
16
May, 2021
15
February, 2023
6
July, 2019
6
November, 2020
4
October, 2019
3
October, 2022
2
August, 2021
2
November, 2019
1
December, 2019
1
March, 2020
Available data
bigWig
188
bam
fastq
156
tsv
80
zippedFastqFolder
54
bed narrowPeak
40
bigBed narrowPeak
18
bed bed3+
16
bed broadPeak
16
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
135
Homo sapiens
Biosample type
94
primary cell
27
cell line
15
tissue
Organ
210
kidney
182
pancreas
149
heart
136
epithelium
101
bone element
58
vasculature
57
blood vessel
52
eye
47
artery
46
liver
34
connective tissue
20
lung
18
brain
16
skeleton
14
musculature of body
13
limb
10
adipose tissue
8
blood
8
bodily fluid
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
83
HPAP
53
AMP
Genome assembly (visualization)
26
hg19
2
GRCh38
Lab
83
Klaus Kaestner, Upenn
47
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
28
inconsistent ontology term
5
audit script error
files.file_type!
fastq
bigWig
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
136 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
WGBS
Hi-C
MeRIP-seq
RRBS
Capture-C
DNase-seq
total RNA-seq
CRISPR genome editing followed by sgRNA sequencing
RNA microarray
primary cell
pancreatic alpha cell
22
25
1
pancreatic beta cell
13
16
1
pancreatic acinar cell
4
1
endothelial cell of umbilical vein
2
Liver fetal (hepatocyte)
1
+ See 8 more…
cell line
EndoC_BH1
17
1
6
2
1
tissue
pigmented layer of retina
12
2
renal glomerulus
1
See all biosamples
Download