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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
545
total RNA-seq
84
RNA microarray
22
ATAC-seq
6
single cell RNA-seq
3
snDrop-seq
2
pCHi-C
Assay category
551
Transcription
22
DNA accessibility
DNA binding
Date released
662
February, 2021
291
May, 2020
276
August, 2021
234
May, 2021
187
June, 2019
176
May, 2022
February, 2023
118
July, 2018
108
July, 2019
72
October, 2019
61
March, 2020
48
November, 2019
47
September, 2023
25
February, 2020
19
April, 2020
18
September, 2020
16
January, 2021
16
November, 2020
15
May, 2023
10
December, 2019
9
August, 2017
5
April, 2018
5
March, 2023
4
March, 2019
4
October, 2022
3
January, 2018
1
August, 2022
Available data
564
bam
559
tsv
546
bigWig
89
txt
fastq
18
bed narrowPeak
6
csv
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
662
Homo sapiens
Biosample type
545
tissue
88
cell line
26
in vitro differentiated cells
3
primary cell
Organ
455
connective tissue
386
adipose tissue
150
bone element
60
artery
60
blood vessel
60
heart
60
vasculature
26
epithelium
26
pancreas
8
kidney
8
skeleton
6
limb
3
liver
Project
662
AMP
Genome assembly (visualization)
569
hg19
563
GRCh38
Lab
662
AMP-T2D consortium
Audit category:
128
inconsistent ontology term
5
audit script error
1
inconsistent replicate
files.file_type!
fastq
assay_slims!
DNA binding
month_released!
February, 2023
BIOSAMPLE
ASSAY
662 results
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total RNA-seq
RNA microarray
ATAC-seq
single cell RNA-seq
snDrop-seq
pCHi-C
tissue
adipose tissue
381
bone element
84
bone tissue
58
kidney
5
visceral abdominal adipose tissue
3
+ See 13 more…
cell line
smooth muscle cell of the coronary artery
52
8
EndoC_BH1
26
HepG2
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
primary cell
osteoblast
1
1
1
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