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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
185
ChIP-seq
168
ATAC-seq
41
WGBS
30
DNase-seq
29
snATAC-seq
16
pCHi-C
10
Hi-C
9
RRBS
1
DNAme array
1
FAIRE-seq
Assay category
228
DNA accessibility
Transcription
185
DNA binding
51
DNA methylation
10
3D chromatin structure
Target of assay
164
histone
164
histone modification
89
broad histone mark
75
narrow histone mark
16
control
5
RNA binding protein
5
transcription factor
Date released
150
May, 2021
101
May, 2022
100
May, 2020
55
June, 2019
32
October, 2019
13
July, 2019
12
February, 2023
8
January, 2021
5
May, 2019
4
August, 2021
3
October, 2022
2
February, 2021
2
November, 2020
1
August, 2017
1
March, 2020
1
March, 2023
Available data
359
bigWig
357
bam
295
bed narrowPeak
fastq
109
bigBed narrowPeak
101
zippedFastqFolder
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
18
tsv
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
490
Homo sapiens
Biosample type
1276
tissue
490
primary cell
130
in vitro differentiated cells
125
cell line
4
stem cell
Organ
152
epithelium
83
pancreas
30
kidney
29
vasculature
26
blood vessel
24
connective tissue
22
vein
12
musculature of body
9
brain
9
heart
9
liver
8
blood
8
bodily fluid
5
eye
1
bone element
bone marrow
Project
278
AMP
107
T1D
104
HPAP
1
ITG
Genome assembly (visualization)
268
hg19
175
GRCh38
Lab
245
AMP-T2D consortium
140
Kyle Gaulton, UCSD
104
Klaus Kaestner, Upenn
1
ITG
Audit category:
43
inconsistent ontology term
4
audit script error
files.file_type!
fastq
assay_slims!
Transcription
organ_slims!
bone marrow
BIOSAMPLE
ASSAY
490 results
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ChIP-seq
ATAC-seq
WGBS
DNase-seq
snATAC-seq
pCHi-C
Hi-C
RRBS
DNAme array
FAIRE-seq
primary cell
monocyte
85
15
1
1
pancreatic alpha cell
22
25
1
CD8-positive, alpha-beta T cell
33
2
1
pancreatic beta cell
13
16
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
22
1
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